PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_7F70575F9.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 293aa    MW: 30534.3 Da    PI: 7.771
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_7F70575F9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.81.2e-264105196
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilk 82 
                            +C++C+ lr++Ca+dC+++p++     +++q++++ +++k++G++ +l+ll+a  ++  r+++++sl+yeA+ r+ +PvyGa+g++++
  Traes_4BL_7F70575F9.1   4 SCNGCRALRKGCADDCTIRPCLawirgADAQANATVFLAKFYGRAGLLNLLAAGtDPALRPALFRSLLYEACGRVANPVYGATGLFTT 91 
                            6*********************9999777899********************9845566***************************** PP

                 DUF260  83 lqqqleqlkaelal 96 
                            +q++ +q +++++ 
  Traes_4BL_7F70575F9.1  92 GQWEACQDAVQAVF 105
                            *******9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.1043110IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-224103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRASCNGCRA LRKGCADDCT IRPCLAWIRG ADAQANATVF LAKFYGRAGL LNLLAAGTDP  60
ALRPALFRSL LYEACGRVAN PVYGATGLFT TGQWEACQDA VQAVFEGRRI PVRSGAVRHP  120
GLVAAYDVRR HVPRPNVVPA PANAAGPLAL GVSRAMFKRA SSSSTAKSKS PSGAGRGEHD  180
GDLDRVPSHG ESAGSHDHVE DDGVAVAVAV AAKQVRGESR DAEAEAASHV SQAERNPPVP  240
QLAREDDDEI GLELTLGFGS STRVLRSPPA RSDAASSSSA ECGHIGLLLD LPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577486.11e-88PREDICTED: LOB domain-containing protein 42-like
TrEMBLW5E4X70.0W5E4X7_WHEAT; Uncharacterized protein
STRINGBRADI4G16750.13e-88(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-44LOB domain-containing protein 41
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]